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In this study a SIV infection was induced in monkeys by intravenous infection with a SIV. Four monkeys were infected with the ARQ-SIVmac239 cell-free virus. The group of infected monkeys was divided into two groups, one ART administered the first time after infection and the other group administered ART after ten days post infection. Animals were monitored for T cell immune activation with CD4+ T cell surface marker CD38 and expression of cytolytic molecules Granzyme A, B and perforin. Cytokine transcription in tissue was examined by RT PCR for quantification of proinflammatory and immune modulatory cytokines, including TNF-alpha, IL-6, IL-1alpha, IFN-gamma, IL-10 and CCL4. T cell activation markers were also assayed in the same tissues. In addition, the gut microbiota status was also monitored with morphological analysis by microscopy and FISH for Bacteroidaceae and Firmicutes. The results showed that even after 10 days post infection, only a portion of the SIV infected monkeys developed a chronic viral infection evidenced by increased viral burden in blood, and progressive CD4+ T cell decline. The SIV infected monkey without ART administration had highest SIV viral loads in blood (10^5.5-9-4.3 viral RNA copies/mL), and animals that were administered ART had the lowest but detectable viral loads in blood (2.6×10^3-1.5-3.7). However, the ART free animal M138-08 did not show any CD4+ T cell decline after 10 weeks post infection and no detectable viremia in blood. Only the viral RNA copy number of M138-08 was higher than that of the ART treated M129-08 at 18 weeks post infection. Virus was not isolated from the tissues from the ART and ART free monkeys. This study showed that a portion of SIV infected monkeys without ART administration had a chronic infection despite of rare viral loads and slow CD4+ T cell decline in blood. d2c66b5586

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